PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0799s0025.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family SRS
Protein Properties Length: 337aa    MW: 37377.7 Da    PI: 7.1644
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0799s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702227.52.5e-701042722154
               DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel............. 78 
                          r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++++s++++++kr re              
  Cagra.0799s0025.1.p 104 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSTSSRETQNTKRLREAsggdnnnnddkdh 193
                          7899*********************************************************99999555555555555555555555544 PP

               DUF702  79 kskkqsalsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                          +    sal++t++++++s++ le+s+ lP+ev+s+avfrcvrvss+++  +++e+aYqtav+igGhvfkGiLydqG+++
  Cagra.0799s0025.1.p 194 SGGGGSALANTRVVNTNSNSGLEVSQhLPPEVNSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHVFKGILYDQGPDQ 272
                          7788899*************9998776*******************98535567***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.5E-64107271IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.8E-28109151IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.4E-26220270IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAGFFYLGGR DNNSKQDHHQ DKNYLYLYKD EIYNNNKGFE IWPPQYFQQQ EQPQQQQHAS  60
APANFYSFGM VPSGSSSNNN NSRSRSLYFN VVSDHEPGGF TVTRQGGMNC QDCGNQAKKD  120
CPHMRCRTCC KSRGFHCQTH VKSTWVPAAK RRERLAQLAS LQHHSTSSRE TQNTKRLREA  180
SGGDNNNNDD KDHSGGGGSA LANTRVVNTN SNSGLEVSQH LPPEVNSPAV FRCVRVSSIE  240
EDEDDQEYAY QTAVNIGGHV FKGILYDQGP DQDHHHHHHH LNLLASTATT TNVEETATKT  300
VAGNNSNGLM LDPSSLYPAQ LNSFIAGTSF FTPPRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8006200.0AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds.
GenBankAY9247300.0AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301163.10.0hypothetical protein CARUB_v10021561mg
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLR0GEL10.0R0GEL1_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.2__1830__AT1G75520.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-165SHI-related sequence 5